Wednesday, July 25, 2012

SHRINE National Meeting

Mark Overhage, formerly of the Regenstrief Institute and now of Siemens gave the keynote. He emphasized what can be done today with Big Data and how much of it can (and cannot) be extracted from observational data from healthcare. He cast the challenge of analysis in the context of accountable care. He also reviewed how the coarse grained guidelines often can run counter to the best population-evidence-based decision models.Marc Overhage, MD, PhD

Keith Marsolo described the comprehensive efforts at CCHMC to harness healthcare data to improve quality and then how he has employed the SHRINE infrastructure to allow for large inter institutional registries (particularly in Inflammatory Bowel Disease).

SHRINE Meeting

Mark Natter described the value of large registries and illustrated how to create these cost-effectively using SHRINE for the CARRAnet pediatric rheumatological disease registry.

SHRINE Meeting

David Ortiz then described the technical details of the self-scaling system that implements for the CARRAnet SHRINE.

David Ortiz

Rebecca Miksad described her provocative study of IBD, colon cancer and diabetes using SHRINE.

SHRINE National meeting

Lisa Dahm described the very impressive 11 million patient UCReX SHRINE Implementation that is currently likely the largest near-real-time clinical patient data resource.

SHRINE National meeting

John Hutton summarized what it takes for an institution like Cincinatti Childrens Hospital Medical Center to participate in the eMERGE network (along with Boston Children's Hospital) using the SHRINE mechanism as a means to provide real-time phenotyping for genomic studies.

SHRINE National meeting

Day 2 SHRINE Meeting

There was a highly productive conversation about what it will take to scale SHRINE for clinical trials nationwide. We had a longer agenda but there was so much interest in the regulatory implications, in the different network topology, different loci of control, different levels of identification, different models of user registration, different models of reduplication of patient identities.

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Tuesday, July 24, 2012

i2b2 AUG

Attendance was as good (slightly better) than last year despite this date being in the midst of the Summer doldrums.

i2b2 AUG

I spoke about the positive disruptive effect i2b2 was having on data sharing, code sharing, clinical domain script sharing (e.g. upload from ETL), and even electronic health record functionality.

Toothless wonder

Shawn Murphy brought us up to date on temporal reasoning, text searching and other 1.7 features.

Mike Mendis reviewed new infrastructure components (Jboss 7, Bamboo etc)

The parallel track of poster sessions was well attended.

i2b2 AUG National Meeting 2012

Ulrich Sax gave an impressive review of al the i2b2 activity occurring in Germany

AUG i2b3

AUG i2b3

Sebastian Mate described and then demonstrated(!) the i2b2 install wizard.

AUG i2b3

Andrew Post from Emory described the use of i2b2 for quality improvement, temporal abstraction, the creation of individual i2b2 instances in the AWS cloud, predictive modeling and the Minority Health Grid.

AUG i2b3

Michael Buck, NYC Dept of Public Health described relevant efforts in the Query Health effort. He provided interesting insights in the QDM data model fro the National Quality Forum and how it fits into the i2b2 ontology. These codes (now represented in the i2b2 ontology) will determine the operational definitions of the characteristics of phenotypes that are linked to quality outcomes (and therefore reimbursement).

AUG i2b3

Day 2:

Shawn Murphy introduced the next step of SHRINE, SHRINE-CT (CT = Clinical Trials) to enable a distributed mechanism of identifying patients meeting criteria for trials and then recruiting them. This is important because so many patients "have" a pathology and yet do not meet criteria for a trial. SHRINE-CT allows you to (with the right credentials and IRB permissions) browse across multiple patient populations to find the "right" subjects for the clinical trial. He also spoke about the SMART EMR view and other mechanisms for community contributions.

Nich Wattanasin gave us the details on his work on making SMART work atop of i2b2 and the workflows that this enables.

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Lori Philips

Lori Philips described the ontology mapping cell and focused on the complexity of mapping one large terminology to another (e.g. ICD9 <-> ICD10).

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Brian Wilson from Tufts University described the GARLIC genomic integration cell that includes annotation, search (by variant ontology) and display.