Friday, March 25, 2011

NLP

Guergana Savova led a discussion on the annotation tool, with a focus on functional status (e.g. SF 36). Pete Szolovits provided ongoing commentary on the applicability to specific UMLS relations to these annotations.

Diabetes and CVD

Stan shaw led a discussion of inflammatory markers in the diabetes population.

i2b2 EAC

March 24th, External Advisory Committee came to Boston for a visit.

The EAC is constituted of:

Daniel Masys (chair), Vanderbilt University

Elmer Bernstam, University of Texas at Houston

Lisa Cannon-Albright, University of Utah

Peter Tarczy-Hornoch, University of Washington, Seattle

George Hripczak, Columbia University

NIH representative: Valerie Florance, NLM project officer

Very productive meeting with useful directional advice from the EAC.

i2b2 External Advisory Committee 2011

photo

i2b2 External Advisory Committee 2011

i2b2 External Advisory Committee 2011

Sunday, March 20, 2011

i2b2 All Hands Meeting

Eric Perakslis PhD presented his work on i2b2 in the J&J context and beyond with tranSMART. Interestingly, this i2b2 instance is hosted on the Amazon EC2 cloud. He had the temerity to run a live demo which worked flawlessly. Good Karma! Also the involvement of tranSMART with the Innovative Medicines Initiative in Europe with significant uptake by pharmaceutical industry (i.e. GSK/ECLIPSE, AstraZeneca, Pfizer, Novartis) was intriguing and encouraging.

His slide show is available here.

Other i2b2 business reviewed including the very success i2b2/NCBO tutorial last week at AMIA in San Francisco and the other SHRINE implementations that are occurring nationally.